Overview  Package   Class  Tree  Deprecated  Index  Help 
 PREV CLASS   NEXT CLASS FRAMES    NO FRAMES    
SUMMARY: NESTED | FIELD | CONSTR | METHOD DETAIL: FIELD | CONSTR | METHOD

org.genepattern.util
Interface IGPConstants

All Known Implementing Classes:
GPConstants, LSIDUtil
public interface IGPConstants

Field Summary
static int ACCESS_PRIVATE
          access_id values for database
static int ACCESS_PUBLIC
           
static java.lang.String ANT
           
static java.lang.String ANY
          any
static java.lang.String AUTHOR
          TaskInfoAttributes author key
static java.lang.String COMMAND_LINE
          TaskInfoAttributes command line key
static java.lang.String COMMAND_PREFIX
           
static java.lang.String CPU_TYPE
          TaskInfoAttributes CPU type key
static java.lang.String DEFAULT_PATCH_REPOSITORY_URL
           
static java.lang.String DEFAULT_PATCH_URL
           
static java.lang.String DESCRIPTION
          TaskInfo.description
static java.lang.String DOMAIN
           
static java.lang.String FILE_FORMAT
           
static java.lang.String FORMER_NAME
          when a task is being renamed, this well known parameter describes the former task name
static java.lang.String INPUT_BASENAME
          input filename without directory or extension
static java.lang.String INPUT_EXTENSION
          input filename extension only
static java.lang.String INPUT_FILE
          input filename without directory
static java.lang.String INPUT_PATH
          input directory
static java.lang.String INSTALLED_PATCH_LSIDS
           
static java.lang.String INVOKE
          TaskInfoAttributes pipeline invocation key (prefixed by language, eg.
static java.lang.String JAVA
          well known name for command that invoked JVM for Omnigene
static java.lang.String JOB_ID
          job ID (analysis_job ID) of running job
static java.lang.String JVM_LEVEL
          TaskInfoAttributes JVM version number key
static java.lang.String LANGUAGE
          TaskInfoAttributes language key
static java.lang.String LEFT_DELIMITER
          parameter delimiters for commandLine and output_filename contents
static java.lang.String LIBDIR
          Location where scripts, DLLs, etc are stored
static java.lang.String LSID
           
static java.lang.String LSID_PROVENANCE
           
static java.lang.String MANIFEST_FILENAME
          well-known name of manifest file within zip file containing GenePatternAnalysisTask descriptors and support files
static int MAX_PARAMETERS
           
static java.lang.String MULTIPLE
           
static java.lang.String NAME
          TaskInfo.name
static java.lang.String ODF
          fileextension of ODF
static java.lang.String OS
          TaskInfoAttributes OS key
static java.lang.Object[][] PARAM_INFO_ATTRIBUTES
           
static java.lang.String PARAM_INFO_CHECKBOX
           
static java.lang.String PARAM_INFO_CHOICE
           
static java.lang.String PARAM_INFO_CHOICE_DELIMITER
           
static int PARAM_INFO_CHOICE_TYPES_MULTIPLE_OFFSET
           
static int PARAM_INFO_CHOICE_TYPES_OFFSET
           
static java.lang.String[] PARAM_INFO_CLIENT_FILENAME
           
static java.lang.String[] PARAM_INFO_DEFAULT_VALUE
           
static java.lang.Object[] PARAM_INFO_DOMAIN
           
static java.lang.Object[] PARAM_INFO_FILE_FORMAT
           
static int PARAM_INFO_NAME_OFFSET
           
static java.lang.String[] PARAM_INFO_OPTIONAL
           
static java.lang.String[] PARAM_INFO_PREFIX
           
static char PARAM_INFO_SPACER
           
static java.lang.String PARAM_INFO_STRING
           
static java.lang.Object[] PARAM_INFO_TYPE
           
static int PARAM_INFO_TYPE_CLASS_OFFSET
           
static java.lang.String PARAM_INFO_TYPE_FLOAT
           
static java.lang.String PARAM_INFO_TYPE_INPUT_FILE
           
static java.lang.String PARAM_INFO_TYPE_INTEGER
           
static int PARAM_INFO_TYPE_NAME_OFFSET
           
static int PARAM_INFO_TYPE_OFFSET
           
static java.lang.String PARAM_INFO_TYPE_SEPARATOR
           
static java.lang.String PARAM_INFO_TYPE_TEXT
           
static java.lang.String[][] PARAM_INFO_TYPES
           
static java.lang.String PATCH_ERROR_EXIT_VALUE
           
static java.lang.String PATCH_SUCCESS_EXIT_VALUE
           
static java.lang.String PERL
           
static java.lang.String PIPELINE_SCRIPT
          TaskInfoAttributes pipeline code key
static java.lang.String PREFIX
          ParameterInfo attribute for prefix string for command line generation
static java.lang.String PRIVACY
          TaskInfoAttributes privacy key
static java.lang.String[] PRIVACY_LEVELS
          array of privacy levels for user choices
static java.lang.String PRIVATE
          two levels of privacy defined: public, private.
static java.lang.String PUBLIC
          two levels of privacy defined: public, private.
static java.lang.String QUALITY
          TaskInfoAttributes quality key
static java.lang.String QUALITY_DEVELOPMENT
          three levels of quality defined: development, preproduction, production
static java.lang.String[] QUALITY_LEVELS
          array of quality levels for user choices
static java.lang.String QUALITY_PREPRODUCTION
          three levels of quality defined: development, preproduction, production
static java.lang.String QUALITY_PRODUCTION
          three levels of quality defined: development, preproduction, production
static java.lang.String R
           
static java.lang.String R_HOME
           
static java.lang.String REQUIRED_PATCH_LSIDS
           
static java.lang.String REQUIRED_PATCH_URLS
           
static java.lang.String[] RESERVED_PARAMETER_NAMES
           
static java.lang.String RIGHT_DELIMITER
          parameter delimiters for commandLine and output_filename contents
static java.lang.String SERIALIZED_MODEL
           
static java.lang.String STDERR
          filename of well-known file that may be output by a job, representing the output to the stderr stream of the process
static java.lang.String STDOUT
          filename of well-known file that may be output by a job, representing the output to the stdout stream of the process
static java.lang.String SUITE_MANIFEST_FILENAME
           
static java.lang.String SUITE_NAMESPACE
           
static java.lang.String TASK_ID
          task ID (task_master ID) of running job
static java.lang.String[] TASK_INFO_ATTRIBUTES
          names of all expected TaskInfoAttributes from manifest file (or other new task submission)
static java.lang.String TASK_NAMESPACE
           
static java.lang.String TASK_TYPE
          TaskInfoAttributes task type key
static java.lang.String TASK_TYPE_PIPELINE
          well known task type that gets special handling in menus and browsers
static java.lang.String TASK_TYPE_VISUALIZER
          well known task type that gets special handling in menus and browsers
static java.lang.String TASKLOG
          filename of well-known file that may be output by a job, representing the provenance data of the process
static java.lang.String TOMCAT
           
static java.lang.String[] UNREQUIRED_PARAMETER_NAMES
           
static java.lang.String USER_LOGGED_OFF
          request attribute, set when the user has logged off
static java.lang.String USERID
          TaskInfoAttributes userID key
static java.lang.String UTF8
           
static java.lang.String VERSION
          TaskInfoAttributes version key
 

Field Detail

NAME

public static final java.lang.String NAME
TaskInfo.name

See Also:
Constant Field Values

DESCRIPTION

public static final java.lang.String DESCRIPTION
TaskInfo.description

See Also:
Constant Field Values

LIBDIR

public static final java.lang.String LIBDIR
Location where scripts, DLLs, etc are stored

See Also:
Constant Field Values

INPUT_FILE

public static final java.lang.String INPUT_FILE
input filename without directory

See Also:
Constant Field Values

INPUT_BASENAME

public static final java.lang.String INPUT_BASENAME
input filename without directory or extension

See Also:
Constant Field Values

INPUT_EXTENSION

public static final java.lang.String INPUT_EXTENSION
input filename extension only

See Also:
Constant Field Values

INPUT_PATH

public static final java.lang.String INPUT_PATH
input directory

See Also:
Constant Field Values

JOB_ID

public static final java.lang.String JOB_ID
job ID (analysis_job ID) of running job

See Also:
Constant Field Values

TASK_ID

public static final java.lang.String TASK_ID
task ID (task_master ID) of running job

See Also:
Constant Field Values

JAVA

public static final java.lang.String JAVA
well known name for command that invoked JVM for Omnigene

See Also:
Constant Field Values

PERL

public static final java.lang.String PERL
See Also:
Constant Field Values

R

public static final java.lang.String R
See Also:
Constant Field Values

R_HOME

public static final java.lang.String R_HOME
See Also:
Constant Field Values

TOMCAT

public static final java.lang.String TOMCAT
See Also:
Constant Field Values

ANT

public static final java.lang.String ANT
See Also:
Constant Field Values

COMMAND_PREFIX

public static final java.lang.String COMMAND_PREFIX
See Also:
Constant Field Values

AUTHOR

public static final java.lang.String AUTHOR
TaskInfoAttributes author key

See Also:
Constant Field Values

FORMER_NAME

public static final java.lang.String FORMER_NAME
when a task is being renamed, this well known parameter describes the former task name

See Also:
Constant Field Values

COMMAND_LINE

public static final java.lang.String COMMAND_LINE
TaskInfoAttributes command line key

See Also:
Constant Field Values

TASK_TYPE

public static final java.lang.String TASK_TYPE
TaskInfoAttributes task type key

See Also:
Constant Field Values

ANY

public static final java.lang.String ANY
any

See Also:
Constant Field Values

CPU_TYPE

public static final java.lang.String CPU_TYPE
TaskInfoAttributes CPU type key

See Also:
Constant Field Values

OS

public static final java.lang.String OS
TaskInfoAttributes OS key

See Also:
Constant Field Values

JVM_LEVEL

public static final java.lang.String JVM_LEVEL
TaskInfoAttributes JVM version number key

See Also:
Constant Field Values

LANGUAGE

public static final java.lang.String LANGUAGE
TaskInfoAttributes language key

See Also:
Constant Field Values

REQUIRED_PATCH_LSIDS

public static final java.lang.String REQUIRED_PATCH_LSIDS
See Also:
Constant Field Values

REQUIRED_PATCH_URLS

public static final java.lang.String REQUIRED_PATCH_URLS
See Also:
Constant Field Values

INSTALLED_PATCH_LSIDS

public static final java.lang.String INSTALLED_PATCH_LSIDS
See Also:
Constant Field Values

DEFAULT_PATCH_URL

public static final java.lang.String DEFAULT_PATCH_URL
See Also:
Constant Field Values

DEFAULT_PATCH_REPOSITORY_URL

public static final java.lang.String DEFAULT_PATCH_REPOSITORY_URL
See Also:
Constant Field Values

PATCH_SUCCESS_EXIT_VALUE

public static final java.lang.String PATCH_SUCCESS_EXIT_VALUE
See Also:
Constant Field Values

PATCH_ERROR_EXIT_VALUE

public static final java.lang.String PATCH_ERROR_EXIT_VALUE
See Also:
Constant Field Values

INVOKE

public static final java.lang.String INVOKE
TaskInfoAttributes pipeline invocation key (prefixed by language, eg. RInvoke)

See Also:
Constant Field Values

PREFIX

public static final java.lang.String PREFIX
ParameterInfo attribute for prefix string for command line generation

See Also:
Constant Field Values

QUALITY

public static final java.lang.String QUALITY
TaskInfoAttributes quality key

See Also:
Constant Field Values

PRIVACY

public static final java.lang.String PRIVACY
TaskInfoAttributes privacy key

See Also:
Constant Field Values

USERID

public static final java.lang.String USERID
TaskInfoAttributes userID key

See Also:
Constant Field Values

VERSION

public static final java.lang.String VERSION
TaskInfoAttributes version key

See Also:
Constant Field Values

PIPELINE_SCRIPT

public static final java.lang.String PIPELINE_SCRIPT
TaskInfoAttributes pipeline code key

See Also:
Constant Field Values

SERIALIZED_MODEL

public static final java.lang.String SERIALIZED_MODEL
See Also:
Constant Field Values

TASK_TYPE_VISUALIZER

public static final java.lang.String TASK_TYPE_VISUALIZER
well known task type that gets special handling in menus and browsers

See Also:
Constant Field Values

TASK_TYPE_PIPELINE

public static final java.lang.String TASK_TYPE_PIPELINE
well known task type that gets special handling in menus and browsers

See Also:
Constant Field Values

QUALITY_DEVELOPMENT

public static final java.lang.String QUALITY_DEVELOPMENT
three levels of quality defined: development, preproduction, production

See Also:
Constant Field Values

QUALITY_PREPRODUCTION

public static final java.lang.String QUALITY_PREPRODUCTION
three levels of quality defined: development, preproduction, production

See Also:
Constant Field Values

QUALITY_PRODUCTION

public static final java.lang.String QUALITY_PRODUCTION
three levels of quality defined: development, preproduction, production

See Also:
Constant Field Values

QUALITY_LEVELS

public static final java.lang.String[] QUALITY_LEVELS
array of quality levels for user choices

PUBLIC

public static final java.lang.String PUBLIC
two levels of privacy defined: public, private. Group is complicated for users and may not be useful

See Also:
Constant Field Values

PRIVATE

public static final java.lang.String PRIVATE
two levels of privacy defined: public, private. Group is complicated for users and may not be useful

See Also:
Constant Field Values

PRIVACY_LEVELS

public static final java.lang.String[] PRIVACY_LEVELS
array of privacy levels for user choices

ACCESS_PRIVATE

public static final int ACCESS_PRIVATE
access_id values for database

See Also:
Constant Field Values

ACCESS_PUBLIC

public static final int ACCESS_PUBLIC
See Also:
Constant Field Values

LSID

public static final java.lang.String LSID
See Also:
Constant Field Values

LSID_PROVENANCE

public static final java.lang.String LSID_PROVENANCE
See Also:
Constant Field Values

DOMAIN

public static final java.lang.String DOMAIN
See Also:
Constant Field Values

FILE_FORMAT

public static final java.lang.String FILE_FORMAT
See Also:
Constant Field Values

TASK_INFO_ATTRIBUTES

public static final java.lang.String[] TASK_INFO_ATTRIBUTES
names of all expected TaskInfoAttributes from manifest file (or other new task submission)

PARAM_INFO_SPACER

public static final char PARAM_INFO_SPACER
See Also:
Constant Field Values

PARAM_INFO_TYPE_SEPARATOR

public static final java.lang.String PARAM_INFO_TYPE_SEPARATOR
See Also:
Constant Field Values

PARAM_INFO_CHOICE_DELIMITER

public static final java.lang.String PARAM_INFO_CHOICE_DELIMITER
See Also:
Constant Field Values

PARAM_INFO_CHOICE

public static final java.lang.String PARAM_INFO_CHOICE
See Also:
Constant Field Values

PARAM_INFO_STRING

public static final java.lang.String PARAM_INFO_STRING
See Also:
Constant Field Values

PARAM_INFO_CHECKBOX

public static final java.lang.String PARAM_INFO_CHECKBOX
See Also:
Constant Field Values

PARAM_INFO_TYPE_INTEGER

public static final java.lang.String PARAM_INFO_TYPE_INTEGER
See Also:
Constant Field Values

PARAM_INFO_TYPE_TEXT

public static final java.lang.String PARAM_INFO_TYPE_TEXT
See Also:
Constant Field Values

PARAM_INFO_TYPE_FLOAT

public static final java.lang.String PARAM_INFO_TYPE_FLOAT
See Also:
Constant Field Values

PARAM_INFO_TYPE_INPUT_FILE

public static final java.lang.String PARAM_INFO_TYPE_INPUT_FILE
See Also:
Constant Field Values

PARAM_INFO_TYPE_NAME_OFFSET

public static final int PARAM_INFO_TYPE_NAME_OFFSET
See Also:
Constant Field Values

PARAM_INFO_TYPE_CLASS_OFFSET

public static final int PARAM_INFO_TYPE_CLASS_OFFSET
See Also:
Constant Field Values

PARAM_INFO_TYPES

public static final java.lang.String[][] PARAM_INFO_TYPES

PARAM_INFO_NAME_OFFSET

public static final int PARAM_INFO_NAME_OFFSET
See Also:
Constant Field Values

PARAM_INFO_TYPE_OFFSET

public static final int PARAM_INFO_TYPE_OFFSET
See Also:
Constant Field Values

PARAM_INFO_CHOICE_TYPES_OFFSET

public static final int PARAM_INFO_CHOICE_TYPES_OFFSET
See Also:
Constant Field Values

PARAM_INFO_CHOICE_TYPES_MULTIPLE_OFFSET

public static final int PARAM_INFO_CHOICE_TYPES_MULTIPLE_OFFSET
See Also:
Constant Field Values

MULTIPLE

public static final java.lang.String MULTIPLE
See Also:
Constant Field Values

PARAM_INFO_CLIENT_FILENAME

public static final java.lang.String[] PARAM_INFO_CLIENT_FILENAME

PARAM_INFO_DEFAULT_VALUE

public static final java.lang.String[] PARAM_INFO_DEFAULT_VALUE

PARAM_INFO_TYPE

public static final java.lang.Object[] PARAM_INFO_TYPE

PARAM_INFO_OPTIONAL

public static final java.lang.String[] PARAM_INFO_OPTIONAL

PARAM_INFO_PREFIX

public static final java.lang.String[] PARAM_INFO_PREFIX

PARAM_INFO_FILE_FORMAT

public static final java.lang.Object[] PARAM_INFO_FILE_FORMAT

PARAM_INFO_DOMAIN

public static final java.lang.Object[] PARAM_INFO_DOMAIN

PARAM_INFO_ATTRIBUTES

public static final java.lang.Object[][] PARAM_INFO_ATTRIBUTES

MAX_PARAMETERS

public static final int MAX_PARAMETERS
See Also:
Constant Field Values

LEFT_DELIMITER

public static final java.lang.String LEFT_DELIMITER
parameter delimiters for commandLine and output_filename contents

See Also:
Constant Field Values

RIGHT_DELIMITER

public static final java.lang.String RIGHT_DELIMITER
parameter delimiters for commandLine and output_filename contents

See Also:
Constant Field Values

MANIFEST_FILENAME

public static final java.lang.String MANIFEST_FILENAME
well-known name of manifest file within zip file containing GenePatternAnalysisTask descriptors and support files

See Also:
Constant Field Values

USER_LOGGED_OFF

public static final java.lang.String USER_LOGGED_OFF
request attribute, set when the user has logged off

See Also:
Constant Field Values

RESERVED_PARAMETER_NAMES

public static final java.lang.String[] RESERVED_PARAMETER_NAMES

UNREQUIRED_PARAMETER_NAMES

public static final java.lang.String[] UNREQUIRED_PARAMETER_NAMES

STDOUT

public static final java.lang.String STDOUT
filename of well-known file that may be output by a job, representing the output to the stdout stream of the process

See Also:
Constant Field Values

STDERR

public static final java.lang.String STDERR
filename of well-known file that may be output by a job, representing the output to the stderr stream of the process

See Also:
Constant Field Values

TASKLOG

public static final java.lang.String TASKLOG
filename of well-known file that may be output by a job, representing the provenance data of the process

See Also:
Constant Field Values

ODF

public static final java.lang.String ODF
fileextension of ODF

See Also:
Constant Field Values

UTF8

public static final java.lang.String UTF8
See Also:
Constant Field Values

TASK_NAMESPACE

public static final java.lang.String TASK_NAMESPACE
See Also:
Constant Field Values

SUITE_NAMESPACE

public static final java.lang.String SUITE_NAMESPACE
See Also:
Constant Field Values

SUITE_MANIFEST_FILENAME

public static final java.lang.String SUITE_MANIFEST_FILENAME
See Also:
Constant Field Values
Overview  Package   Class  Tree  Deprecated  Index  Help 
 PREV CLASS   NEXT CLASS FRAMES    NO FRAMES    
SUMMARY: NESTED | FIELD | CONSTR | METHOD DETAIL: FIELD | CONSTR | METHOD
Hosted by docs.bugaco.com