IResExpressionData

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org.genepattern.data.expr
Interface IResExpressionData

All Superinterfaces:: IExpressionData

All Known Implementing Classes:: ResExpressionData

public interface IResExpressionData
extends IExpressionData

An interface for expression data that includes Affymetrix absent, present, and marginal calls.

Field Summary

static int ABSENT


static int MARGINAL


static int PRESENT


Method Summary

int getCall(int row, int column)
          Gets the Affymetrix call at the given row and column.

java.lang.String getCallAsString(int row, int column)
          Gets the Affymetrix call at the given row and column.

Methods inherited from interface org.genepattern.data.expr.IExpressionData

getColumnCount, getColumnDescription, getColumnIndex, getColumnName, getRowCount, getRowDescription, getRowIndex, getRowName, getValue, getValueAsString

Field Detail

PRESENT

public static final int PRESENT

See Also:: Constant Field Values

ABSENT

public static final int ABSENT

See Also:: Constant Field Values

MARGINAL

public static final int MARGINAL

See Also:: Constant Field Values

Method Detail

getCall

public int getCall(int row,
                   int column)

Gets the Affymetrix call at the given row and column. A value of IResExpressionData.PRESENT indicates a present call, IResExpressionData.ABSENT an absent call, and IResExpressionData.MARGINAL a marginal call.

Parameters:: row - The row index; column - The column index
Returns:: The call

getCallAsString

public java.lang.String getCallAsString(int row,
                                        int column)

Gets the Affymetrix call at the given row and column. A value of 'P' indicates a present call, 'A' an absent call, and 'M' a marginal call.

Parameters:: row - The row index; column - The column index
Returns:: The call